XP:cellular component xp cell
From GO Public
logical definitions of CC cross-product classes, in terms of cell types
GO-internal XPs for CC are divided into 3 files
- XP:cellular_component_xp_go - CC x {BP,MF}
- XP:cellular_component_xp_self - CC x CC
- XP:cellular_component_xp_cell - CC x CL
Example:
- Male germ cell nucleus =def nucleus that part_of male germ cell
Contents |
[edit] Methods
Obol was used to generate the initial version of the file. This was then vetted by cjm. Obol grammar: obol_cellular_component_cell prolog grammar
[edit] ontologies used
- GO (CC) - terms defined
- CL - for differentia
- RO
- ro_proposed
[edit] availability
[edit] Results
[edit] Relations
All we use so far is the part_of relation
[edit] Examples
[Term] id: GO:0030446 ! hyphal cell wall intersection_of: GO:0005618 ! cell wal intersection_of: part_of CL:0000286 ! hyphal cell
[Term] id: GO:0016528 ! sarcoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: part_of CL:0000187 ! muscle cell
[Term] id: GO:0042582 ! azurophil granule intersection_of: GO:0005766 ! primary lysosome intersection_of: part_of CL:0000775 ! neutrophil [Term] id: GO:0014704 ! intercalated disc intersection_of: GO:0005911 ! intercellular junction intersection_of: part_of CL:0000746 ! cardiac muscle cell
